DreEX6006492 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38818961-38821062:+
Coord C1 exon
chr7:38818961-38819021
Coord A exon
chr7:38819829-38819942
Coord C2 exon
chr7:38820922-38821062
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTAAATGATAATTTGTTCAGGTG
3' ss Score
4.62
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CTTGGAAATGTATCGCAAGGTTCACAACTTGAGAATTTTGGCCTGTGGGGGGGATGGCACG
Seq A exon
GTGGGCTGGATCTTATCTGCACTTGATCAGCTGCAATTAAACCCTTCTCCTGCTGTGGCCGTACTTCCCCTGGGCACAGGAAATGACCTTGCTAGGACGCTAAACTGGGGTGGG
Seq C2 exon
GGCTACACAGATGAACCTCTGAGTAAAATCCTGTCTCATGTGGAGGATGGGAATATTGTACAGCTGGATCGGTGGAATCTTGTTGTGAAGCCCAACCCAGAGGCAGGACCAGAGGAAAGAGACGAGCAGGTGACGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'20-18,'20-17,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.319
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=51.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAAATGTATCGCAAGGTTCAC
R:
CTTGTCCGTCACCTGCTCG
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]