RnoEX6017860 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80850498-80850994:-
Coord C1 exon
chr3:80850934-80850994
Coord A exon
chr3:80850731-80850844
Coord C2 exon
chr3:80850498-80850638
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCTGCCTTCCTCCAGGTT
3' ss Score
12.5
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGGAAATGTACCGCAAAGTCCATAATTTGAGGATTCTGGCTTGCGGGGGTGATGGCACG
Seq A exon
GTTGGCTGGATTCTTTCCACCCTAGACCAGCTGCGCTTAAAACCACCACCTCCTGTGGCCATCCTGCCCCTGGGCACTGGCAATGACCTGGCCCGAACTCTCAACTGGGGTGGG
Seq C2 exon
GGTTACACAGATGAGCCAGTGTCAAAGATCCTTTCCCATGTAGAGGAGGGGAACGTGGTACAGCTGGACCGTTGGGACCTCCGAGCAGAGCCCAACCCTGAGGCAGGGCCTGAGGAGCGAGATGACGGAGCCACTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'31-36,'31-34,32-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.447
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=51.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAATGTACCGCAAAGT
R:
CCGGTCAGTGGCTCCGTC
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]