DreEX6100912 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7705105-7709884:+
Coord C1 exon
chr25:7705105-7705165
Coord A exon
chr25:7705859-7705972
Coord C2 exon
chr25:7709744-7709884
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTATGCTGGTTTTATGACAGGTT
3' ss Score
7.47
5' ss Seq
GGGGTATGA
5' ss Score
5.41
Exon sequences
Seq C1 exon
GTTAGAAATGTACAGCAAAGTGCCCAACCTGCGCATCCTTGTTTGTGGTGGCGATGGAACG
Seq A exon
GTTGGCTGGATTCTGTCAGTGCTGGATGAGCTTCAGTTGAACCCTCAACCTGCTGTGGCCGTTCTTCCCCTTGGGACAGGAAATGACCTGGCCAGGACCCTCAACTGGGGCGGG
Seq C2 exon
GGCTACACAGATGAACCAGTATCCAAGATCCTTTCCCATGTTGAAGACGGCATCATCGTCCAGCTGGATCGCTGGAACCTGAGTGTGGAAGCTAATTTAGAGGCCAGCGATGAGGACAAAGATGAACAACAGACCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-'12-19,'12-18,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0078119=DAGK_cat=PD(19.2=51.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGAAATGTACAGCAAAGTGCCC
R:
CTTGTCGGTCTGTTGTTCATCT
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]