BtaEX6060548 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77238537-77240068:+
Coord C1 exon
chr15:77238537-77238614
Coord A exon
chr15:77239823-77239879
Coord C2 exon
chr15:77240000-77240068
Length
57 bp
Sequences
Splice sites
3' ss Seq
GGTCACTGCGTGTTTCACAGATA
3' ss Score
7.46
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CAGAAATCAGTGTCCCGGAGAAAGTGTGCAGCCTGCAAGATTGTGGTCCACACACCCTGCATTGAGCAGCTCGAGAAG
Seq A exon
ATAAATTTCCGCTGTAAGCCATCCTTCCGTGAATCGGGCTCCAGGAACGTCCGTGAG
Seq C2 exon
CCAACCTTCGTGCGGCACCACTGGGTACACCGGCGACGCCAGGACGGCAAGTGTCGGCACTGCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-'13-10,'13-8,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTCCCGGAGAAAGTGT
R:
GTGCCGACACTTGCCGTC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]