MmuEX6103051 @ mm10
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91942290-91944099:-
Coord C1 exon
chr2:91944022-91944099
Coord A exon
chr2:91942628-91942684
Coord C2 exon
chr2:91942290-91942358
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTCGCTGCAATGTTTCACAGATC
3' ss Score
7.01
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCGAAGTCAGCGCCCAGAAAAAAGTGTGCAGCCTGTAAGATCGTGGTGCATACCCAATGCATTAAGCAGCTGGAAAAG
Seq A exon
ATCAATTTCCGCTGTAAGCCGTCCTTCCGCGAATCAGGCTCCAGGAATGTCCGTGAG
Seq C2 exon
CCAACCTTCGTAAGACACCACTGGGTCCACAGACGACGCCAGGATGGCAAGTGTCGGCACTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'16-28,'16-27,18-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.234 C2=0.042
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(43.9=100)
A:
PF0013017=C1_1=PD(8.8=26.3)
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGTCAGCGCCCAGAAAAA
R:
CCGACACTTGCCATCCTGG
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types