DreEX6006500 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38812561-38817543:+
Coord C1 exon
chr7:38812561-38812632
Coord A exon
chr7:38813332-38813388
Coord C2 exon
chr7:38817475-38817543
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCCTTGTTTTTCAGATA
3' ss Score
12.73
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTATTGGATTGGAATGCTCCACCTCAGGGGGAGGGGCTTGATGAGATGCCTCTCAAAGAGCCGTCATTCAGA
Seq A exon
ATAAACTTCAGATGTAAACCGTCTTTCAGGGAGTCAGGATCACGGAACATCCGAGAG
Seq C2 exon
CCTGCAATAGTGCGACACCACTGGGTCCATCGGAGAAGACAAGAGGGCAAATGCAAACAGTGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'11-10,'11-7,12-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.018 C2=0.072
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(3.7=8.3)
A:
NO
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCTCCACCTCAGGGGG
R:
CCACACTGTTTGCATTTGCCC
Band lengths:
126-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]