GgaEX0012171 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25822314-25824240:-
Coord C1 exon
chr5:25824163-25824240
Coord A exon
chr5:25823784-25823840
Coord C2 exon
chr5:25822314-25822382
Length
57 bp
Sequences
Splice sites
3' ss Seq
CATATGTGTTCAATCCACAGATA
3' ss Score
9.02
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CAAAAACCTCTCTCCAGGCGTAAGTGTGCAGCATGCAAGATCATAGTGCATACACCCTGCATAGAACAGCTGGAGAAA
Seq A exon
ATAAATTTCCGCTGCAAACCTTCCTTCAGGGAGTCGGGATCTCGGAATGTACGGGAG
Seq C2 exon
CCCATAGTTGTCCGGCATCACTGGGTGCATCGGAGGCGACAGGAGGGGAAATGCCGGCAGTGCGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(43.9=100)
A:
PF0013017=C1_1=PD(8.8=26.3)
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAACCTCTCTCCAGGCGT
R:
GCATTTCCCCTCCTGTCGC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]