DreEX6100917 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7699152-7701530:+
Coord C1 exon
chr25:7699152-7699229
Coord A exon
chr25:7699318-7699374
Coord C2 exon
chr25:7701462-7701530
Length
57 bp
Sequences
Splice sites
3' ss Seq
AATGTGCGCTTTCCCTACAGATT
3' ss Score
11.64
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
CAAAAGTCTCTTCCCCGCCACAAATGTGCAGCTTGCAAAATATCAGTTCACACAGAGTGCATGAATCAGCTGGACAAG
Seq A exon
ATTAACTTCAGGTGTAAGCCAACTTTTAAAGATCCAGGGACGAAAAATGTCAGAGAA
Seq C2 exon
ACTCCAAATATGAACCATCACTGGGTCCATAGGAGAAGGCAAGATGGAAAATGCCGGCAATGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.316 C2=0.435
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(43.9=100)
A:
PF0013017=C1_1=PD(8.8=26.3)
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGTCTCTTCCCCGCCAC
R:
CCGGCATTTTCCATCTTGCCT
Band lengths:
135-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]