RnoEX0027570 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80852949-80854650:-
Coord C1 exon
chr3:80854573-80854650
Coord A exon
chr3:80853348-80853404
Coord C2 exon
chr3:80852949-80853017
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTTACTGCAATGTTTCACAGATC
3' ss Score
6.76
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
CCGAAGTCAGCGCCCAGAAGAAAGTGTGCAGCCTGTAAGATCGTGGTGCATACCCCTTGCATCGGGCAGCTGGAAAAG
Seq A exon
ATCAATTTCCGCTGTAAGCCATCCTTCCGTGAATCAGGCTCCAGGAATGTCCGTGAG
Seq C2 exon
CCAACCTTCGTAAGACACCACTGGGTCCACAGGCGACGCCAGGATGGCAAGTGTCGGCACTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(43.9=100)
A:
PF0013017=C1_1=PD(8.8=26.3)
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCAGCGCCCAGAAGAAAG
R:
CCGACACTTGCCATCCTGG
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]