BtaEX6060584 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007148 | F2
Description
Bos taurus coagulation factor II (thrombin) (F2), mRNA. [Source:RefSeq mRNA;Acc:NM_173877]
Coordinates
chr15:77535003-77535949:+
Coord C1 exon
chr15:77535003-77535317
Coord A exon
chr15:77535613-77535747
Coord C2 exon
chr15:77535823-77535949
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCGTGTCTGGGTCCCTGCAGAGG
3' ss Score
8.79
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCCAGGACCGAGTCACAGTGGAGGTGATCCCCCGGTCAGGAGGCTCCACTACCAGTCAGTCGCCTCTACTGGAAACATGCGTCCCGGACCGCGGCCGGGAGTACCGGGGGCGGCTGGCGGTGACCACAAGCGGGTCCCGCTGCCTTGCCTGGAGCAGCGAGCAGGCCAAGGCCCTGAGCAAGGACCAGGACTTCAACCCGGCCGTGCCCCTGGCGGAGAACTTCTGCCGCAACCCAGACGGGGACGAGGAGGGCGCCTGGTGCTACGTGGCCGACCAGCCTGGCGACTTTGAGTATTGTGACCTGAACTACTGCG
Seq A exon
AGGAGCCGGTGGATGGAGACCTGGGAGACAGGCTGGGTGAGGACCCGGACCCGGACGCGGCCATCGAGGGACGCACGTCTGAGGACCATTTCCAGCCCTTCTTCAACGAGAAGACCTTTGGCGCCGGGGAGGCCG
Seq C2 exon
ACTGTGGCCTGCGACCCCTGTTCGAGAAGAAGCAGGTGCAGGACCAAACGGAGAAGGAGCTTTTCGAGTCCTACATCGAGGGGCGCATCGTGGAGGGTCAGGACGCGGAGGTTGGCCTCTCGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007148-'9-15,'9-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.478 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=WD(100=74.5)
A:
PF093965=Thrombin_light=PU(40.8=43.5)
C2:
PF093965=Thrombin_light=PD(57.1=65.1),PF0008921=Trypsin=PU(5.2=30.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAAGGACCAGGACTTCA
R:
CGTCCTGACCCTCCACGAT
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]