RnoEX6017847 @ rn6
Exon Skipping
Gene
ENSRNOG00000016325 | F2
Description
coagulation factor II [Source:RGD Symbol;Acc:61996]
Coordinates
chr3:80535915-80536789:-
Coord C1 exon
chr3:80536475-80536789
Coord A exon
chr3:80536117-80536230
Coord C2 exon
chr3:80535915-80536041
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCACTGCCCGGTCTCTACAGATG
3' ss Score
9.23
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCAGGAGGGCCGTACCACTGTGAAAATGACTCCTCGCTCAAGAGGTTCCAAGGAGAATCTGTCGCCTCCATTGGGAGAGTGCCTCCTCGAGCGTGGCCGGCTGTACCAGGGGAACTTAGCTGTGACAACACTTGGGTCCCCCTGCCTGGCCTGGGACAGTTTGCCAACCAAGACCCTGAGCAAGTACCAGAACTTCGACCCTGAGGTGAAACTCGTGCAAAACTTCTGCCGCAATCCAGACCGGGATGAGGAGGGCGCGTGGTGCTTTGTTGCGCAGCAGCCTGGTTTTGAATACTGCAGCCTCAACTACTGTG
Seq A exon
ATGAAGCGGTGGGAGAGGAGAACCATGACGGGGACGAGTCCATCGCAGGACGCACCACCGACGCGGAGTTCCACACCTTCTTCGATGAGAGGACTTTCGGCCTTGGGGAGGCAG
Seq C2 exon
ACTGTGGCCTGCGGCCTTTGTTCGAGAAGAAGTCCTTGACAGACAAAACGGAAAAGGAGCTTCTTGATTCTTACATAGATGGGCGCATCGTGGAGGGCTGGGACGCTGAGAAGGGTATCGCCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016325-'8-11,'8-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=WD(100=73.6)
A:
PF093965=Thrombin_light=PU(40.8=51.3)
C2:
PF093965=Thrombin_light=PD(57.1=65.1),PF0008921=Trypsin=PU(5.2=30.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCCAACCAAGACCCTGA
R:
CACGATGCGCCCATCTATGTA
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]