MmuEX6103017 @ mm10
Exon Skipping
Gene
ENSMUSG00000027249 | F2
Description
coagulation factor II [Source:MGI Symbol;Acc:MGI:88380]
Coordinates
chr2:91629950-91630826:-
Coord C1 exon
chr2:91630509-91630826
Coord A exon
chr2:91630153-91630266
Coord C2 exon
chr2:91629950-91630076
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCACTGCCGGGTCTCTACAGAGG
3' ss Score
6.03
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCCAGGAGGGCCGTACCACTGTGGTGATGACTCCTCGCTCTGGAGGTTCCAAGGACAATCTGTCACCTCCACTGGGACAGTGCCTCACTGAGCGTGGCCGACTATACCAGGGGAATTTGGCTGTGACAACACTTGGGTCCCCCTGCCTGCCCTGGAACAGCTTACCAGCCAAGACCCTGAGCAAGTACCAAGACTTCGACCCCGAGGTGAAACTCGTGGAAAACTTCTGCCGCAACCCAGACTGGGATGAGGAGGGCGCATGGTGCTATGTTGCGGGGCAGCCTGGCGACTTTGAATACTGCAACCTCAACTACTGCG
Seq A exon
AGGAGGCGGTGGGAGAGGAGAACTATGATGTGGACGAGTCCATCGCGGGACGCACCACCGATGCGGAGTTCCACACCTTCTTCAATGAGAAGACCTTCGGCCTTGGGGAGGCAG
Seq C2 exon
ACTGTGGCCTGCGGCCTTTGTTCGAGAAGAAGTCGTTGAAAGACACAACCGAAAAGGAGCTTCTTGACTCTTACATAGACGGGCGCATCGTGGAGGGCTGGGACGCTGAGAAGGGTATCGCCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027249-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(0.1=0.0),PF0005113=Kringle=WD(100=73.8)
A:
PF093965=Thrombin_light=PU(40.8=51.3)
C2:
PF093965=Thrombin_light=PD(57.1=65.1),PF0008921=Trypsin=PU(5.2=30.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAGACCCTGAGCAAGTA
R:
CGATGCGCCCGTCTATGTAAG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types