DreEX0031307 @ danRer10
Exon Skipping
Gene
ENSDARG00000036041 | f2
Description
coagulation factor II (thrombin) [Source:ZFIN;Acc:ZDB-GENE-030131-4606]
Coordinates
chr7:38482124-38484793:+
Coord C1 exon
chr7:38482124-38482435
Coord A exon
chr7:38484474-38484581
Coord C2 exon
chr7:38484667-38484793
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTCATTCACTCTCAGATG
3' ss Score
9.09
5' ss Seq
TAGGTTAGA
5' ss Score
2.99
Exon sequences
Seq C1 exon
GTGAGGCTGTTGTTCCTCCTCCAAAAGCTCCTACTGCAAAACCTGAGCAGCGTCATGTGATAAGCAAATGTCTGCCTGGAAACGGGGAGACCTACACCGGGGAGTTGTTTGTGACTCTGGGGCTACACACCTGCCTGCAGTGGAGCTCCGCAGAAGTACAAGCCTTGATTAAGAAGAAAGAACTTCTGCCTCAAGTTCAGCTGGTGAAGAACCATTGCAGAAACCCAGATGGAGATATGGAGGGTCCCTGGTGTTACATAAAGGCAGCAAGCGGAAACATTACCATTGATTACTGTGATTTAGAGTTGTGCG
Seq A exon
ATGCTCCTTTGGACAAGTTTGTGGAGGAAGGTGGTGGACGAGAAAGAACAACTCTAGACCAAAGGAAAGCTTTCTTTAACCCCCGCAGCTTTGGAAACGGAGAGCTAG
Seq C2 exon
ACTGTGGAGAGCGCCCCTTGTTTGAGAAGATCAACAAAGCAGACAAGAATGAGAAGGAGCTTCTGATGTCCTATACTGGAAGCAGAATTGTGGGAGGAGACGAGGCTGAAGTGGCTAGCGCTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036041-'11-11,'11-9,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.277 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=WD(100=77.1)
A:
PF093965=Thrombin_light=PU(40.8=54.1)
C2:
PF093965=Thrombin_light=PD(57.1=65.1),PF0008921=Trypsin=PU(5.2=30.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACACCGGGGAGTTGTTTG
R:
ATCTTCTCAAACAAGGGGCGC
Band lengths:
253-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]