GgaEX6037718 @ galGal4
Exon Skipping
Gene
ENSGALG00000008332 | F2
Description
prothrombin precursor [Source:RefSeq peptide;Acc:NP_989936]
Coordinates
chr5:22740671-22741838:-
Coord C1 exon
chr5:22741542-22741838
Coord A exon
chr5:22741081-22741191
Coord C2 exon
chr5:22740671-22740797
Length
111 bp
Sequences
Splice sites
3' ss Seq
CATCTTTTTGTCTCTCTCAGACA
3' ss Score
10.48
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCAAGAAAGGACAACAGTTGAGTTCACTCCACGGGTCAAACCATCAACCACAGGGCAGCCTTGTGAATCAGAGAAAGGAATGCTTTATACAGGGACGCTTTCAGTCACTGTATCTGGGGCTAGGTGCCTGCCATGGGCCTCAGAGAAGGCCAAAGCATTGCTCCAAGACAAAACCATTAACCCAGAAGTGAAGCTGCTGGAGAATTACTGTCGGAACCCTGATGCAGATGATGAGGGTGTCTGGTGTGTAATAGATGAACCACCATACTTTGAATACTGTGACCTGCATTACTGCG
Seq A exon
ACAGCTCGCTCGAGGATGAGAATGAACAGGTGGAGGAAATAGCGGGACGTACCATCTTTCAAGAGTTCAAAACCTTCTTTGATGAAAAAACTTTTGGTGAAGGTGAAGCAG
Seq C2 exon
ACTGTGGAACTCGCCCTTTATTCGAAAAGAAACAGATAACAGACCAAAGTGAGAAGGAGCTGATGGACTCCTACATGGGAGGCAGAGTTGTACACGGGAACGATGCAGAAGTTGGAAGCGCCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008332-'7-15,'7-11,9-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=WD(100=78.0)
A:
PF093965=Thrombin_light=PU(40.8=52.6)
C2:
PF093965=Thrombin_light=PD(57.1=65.1),PF0008921=Trypsin=PU(5.2=30.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGCATTGCTCCAAGAC
R:
GCATCGTTCCCGTGTACAACT
Band lengths:
254-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]