BtaEX6062813 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54351570-54357049:+
Coord C1 exon
chr14:54351570-54351755
Coord A exon
chr14:54353610-54353783
Coord C2 exon
chr14:54356867-54357049
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCAATAATTATGTATTGTAGTGA
3' ss Score
4.23
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
TGGTCAACTGTTCTGATCCTGGAATTCCAGCCAATTCCAAAAGAGAAAGTAAAATAGAACATGGGAATTTCACCTATGGCACTGTGGTATTCTACGACTGCAATCCTGGATATTTCTTATTTGGATCTTCAGTTTTGATATGTCAACCAAATGGACAATGGGACAAACCTTTACCAGAATGTATCA
Seq A exon
TGATTGACTGTGGACACCCTGGCGTTCCTCCTAATGCAGTCCTGTCTGGTGAGAAGTATACCTTTGGTTCTACTGTTCACTATTCCTGCACAGGAAAGCGTACACTTCTAGGCCAATCATCAAGGACTTGCCAATTAAACGGCCATTGGAGTGGATCACAACCTCATTGTTCAG
Seq C2 exon
GTGATGCTACTGGTACATGTGGGGATCCAGGTACTCCTGGTCACGGTTCTAGACAGGAAAGCGATTTCCGAACCAAGAGTTCTGTACGCTTTGCCTGTGATACTGGTTATATCCTTCATGGTTCAGAAGAAAGAACATGTTTACCCAATGGCAGTTGGACTGGAAGGCAGCCCGAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'54-59,'54-57,55-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAACTGTTCTGATCCTGG
R:
TCCTGTCTAGAACCGTGACCA
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]