DreEX6042880 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47690687-47723303:-
Coord C1 exon
chr16:47723118-47723303
Coord A exon
chr16:47719077-47719250
Coord C2 exon
chr16:47690687-47690869
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTCTTCTGCAGAGG
3' ss Score
10.87
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TCGTCAACTGCACTGATCCCGGAATACCAGCCAACTCAATCAGGAAGAGCAAAATTGAGTACGGAAACTTCACTTTCGGGACCGTGGTGTCCTATGACTGCAATCCAGGCTATTACCTCTTCGGGTCATCGGTTCTGACCTGCCAGCCGGTGGGCTACTGGGACAAGCCATTACCAGAATGCCTGG
Seq A exon
AGGTGGACTGTGGTCACCCTGGTTCTCCTCCTCATGCGGTTGTAACAGGAGACAAATTCACCTTCGGTTCAACAGTTCACTACAGGTGTTTAGAAGACAGAGTTTTGATTGGTGAATCCACCCGAGCCTGCCAACTGAACGGCCAGTGGGGTGGCTCGCAACCTCATTGCTCAG
Seq C2 exon
GTGATAAACGGGGAGCGTGTGGAGATCCAGGGACTCCGGCTCATGCCACCCGAGAGGAGAGCAGTTTCCAGCAGCACGCCAAAGTTCGCTTCACCTGCTCCACGGGTCACACTCTCTACGGCTCGGCTGAGCGGATCTGCTTCCCCAACGGCACCTGGTCCGGCCGACAGCCCACCTGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'59-58,'59-56,60-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.226
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCGGAATACCAGCCAAC
R:
TGGAAACTGCTCTCCTCTCGG
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]