GgaEX6022141 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139016273-139023591:-
Coord C1 exon
chr2:139023406-139023591
Coord A exon
chr2:139019459-139019632
Coord C2 exon
chr2:139016273-139016455
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCAATAATTATGCATTGTAGTGA
3' ss Score
3.45
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGGTGAATTGTTCCGATCCTGGAATTCCTGCAAATTCCATACGAGAGAGTAAAATAGAACATGGAAATTTCACATATGGCACAGTGGTATTTTATGACTGTAATCCTGGTTATTTTTTATTTGGCTCTTCAGTTTTAGTTTGTCAACCAAATGGTCATTGGGACAAACCTCTGCCTGAATGCATTA
Seq A exon
TGATTGACTGTGGCCATCCTGGCGTTCCTCCTAACGCCGTCCTATCTGGAGATAAATATACATTTGGGTCTACTGTTCATTATACTTGCACAGGTAGACGTTCTCTGTTAGGGCAGTCATCTCGTACATGTCAGTTAAATGGACAGTGGAGTGGATCTCTTCCTCATTGCTCAG
Seq C2 exon
GTGATACAGCTGGTTCTTGTGGTGATCCAGGTATCCCAGGCCATGGGTCTAGGGAAGAAAACAATTTTAAAATTAAAAGCACAGTACATTTCAGCTGTGATATTGGATACATTCTCCATGGCTCAGAAGAAAGAACATGTCTGGCAAATGGAAGTTGGACTGGGAGACAACCTGAATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'56-58,'56-57,57-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAATTGTTCCGATCCTGG
R:
TTCTTCCCTAGACCCATGGCC
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]