HsaEX6082016 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113299293-113303924:-
Coord C1 exon
chr8:113303739-113303924
Coord A exon
chr8:113301594-113301767
Coord C2 exon
chr8:113299293-113299475
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTAATAATTATGTATTGTAGTGA
3' ss Score
4.87
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
TGGTCAACTGTTCTGATCCTGGAATTCCAGCCAATTCTAAAAGAGAAAGTAAAATAGAACATGGAAATTTTACTTACGGCACTGTGGTATTCTATGACTGCAATCCTGGATATTTTTTATTTGGATCTTCAGTTTTGATATGTCAACCAAATGGACAATGGGACAAACCTTTACCAGAATGTATCA
Seq A exon
TGATTGACTGTGGACACCCTGGCGTTCCTCCTAATGCAGTCCTGTCTGGCGAGAAGTATACTTTTGGGTCTACTGTTCACTATTCCTGCACAGGAAAGCGTTCCCTTTTAGGCCAGTCATCAAGAACCTGCCAATTGAATGGCCATTGGAGTGGATCACAACCTCATTGTTCAG
Seq C2 exon
GTGATGCTACTGGGACATGTGGCGATCCAGGTACTCCCGGCCATGGCTCTAGACAGGAAAGCAATTTCAGAACTAAAAGTACTGTACGTTATGCTTGTGATACTGGTTACATCCTTCATGGCTCAGAAGAAAGAACATGTTTAGCTAATGGCAGTTGGACCGGAAGGCAGCCAGAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'64-65,'64-64,65-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.210
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAACTGTTCTGATCCTGG
R:
TTCCTGTCTAGAGCCATGGCC
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)