BtaEX6062835 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54086082-54103231:+
Coord C1 exon
chr14:54086082-54086226
Coord A exon
chr14:54088847-54089034
Coord C2 exon
chr14:54103037-54103231
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCTTTTCTTTTAGTTT
3' ss Score
11.37
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTAAAGCACCCTGTGGAGGCAATTTAACAGGATCTTCAGGATTTATTCTTTCGCCAAACTTCCCTCATCCATATCCCCATAGTAGGGACTGTGACTGGACCATCACCGTCAATGCAGACTATGTTATCTCCTTGGCATTTATCAG
Seq A exon
TTTTAGCATAGAACCAAACTATGATTTCCTCTATATATATGATGGGCCAGACAGTAATAGTCCCTTGATTGGAAGTTTTCAAGACAGCAAATTACCGGAGAGGATAGAAAGCAGCTCAAATAACATGCATTTGGCTTTTCGGAGTGATGGATCTGTTAGTTACACTGGATTTCATTTAGAGTATAAAG
Seq C2 exon
CAAAACTCCGAGAGTCCTGCTTTGATCCAGGCAATATAATGAATGGCACCAGACTGGGAATGGATTATAAATTAGGGTCAACAGTAACCTATTACTGTGATGCTGGTTACATTCTTCAAGGATATTCAACACTCACCTGTATCATGGGAGATGATGGAAGACCTGGATGGAATAGAGTCTTACCAAGTTGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(41.5=89.8)
A:
PF0043115=CUB=PD(57.5=95.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAAACTTCCCTCATCCAT
R:
AGGTCTTCCATCATCTCCCATGA
Band lengths:
258-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]