DreEX6042859 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47894874-47901270:-
Coord C1 exon
chr16:47901132-47901270
Coord A exon
chr16:47895878-47896065
Coord C2 exon
chr16:47894874-47895068
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATGTCTTCTCTCAGTTT
3' ss Score
8.92
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
CTCCTTGTGGTGGAAACATTACTGGCTCATCTGGATTCATACTGTCTCCGAATTTCCCTCATCCGTATCCACACAGCAAGGACTGCGACTGGTTCATCACGGTTCACCCTGACTATGTCATTTCCTTGGCTTTTATTAG
Seq A exon
TTTTAGCATTGAGCCCAATTATGACTTCTTATACATCTACGACGGACCTCACAGCAACAGTCATCTGATCGGCACCTTCCAAGACAGCAAGTTGCCAGAAAAGGTTGAAAGCAGCTCCAACATCATGCACATCGCCTTCCGCAGTGACGGGTCAGTCAGCTACACAGGCTTCCATCTGGAATACAAAG
Seq C2 exon
CTAAACTGCGTGAGGCCTGTTTTGACCCGGGCAGCGTGATGAATGGCACGCGGTTGGGTGGAGACTATAAGCTGGGCTCCACTGTGACCTTCCACTGTGATCCAGGCTACCAGCTACAGGGATATTCCAGCCTCACCTGCGTCATGGGCGCCACCAACAGGCCTGAGTGGAACAGAGCTCTGCCCAGCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(41.5=93.6)
A:
PF0043115=CUB=PD(57.5=95.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTATCCACACAGCAAGGAC
R:
CTGTTCCACTCAGGCCTGTTG
Band lengths:
252-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]