GgaEX6022116 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139119842-139133060:-
Coord C1 exon
chr2:139132922-139133060
Coord A exon
chr2:139129871-139130058
Coord C2 exon
chr2:139119842-139120036
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCCCCCCCCCCACAGTTT
3' ss Score
11.01
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCCCTGTGGAGGAAACCTGACTGGCTCATCAGGTTTTATACTTTCACCAAACTTCCCACATCCTTATCCCCACAGCCGAGATTGTGACTGGACTATCACTGTTAATAATGACTATGTTATATCACTAGCATTTATCAG
Seq A exon
TTTCAGTATAGAACCAAATTATGATTTTCTTTATATTTATGATGGACCAGACAGTAACAGCCCACTGATTGGGAGCTTTCAAGATAGCAAGCTTCCAGAGAGGATAGAAAGCAGTTCAAATAACATGCATCTGGCTTTTCGGAGTGATGGATCTGTTAGTTTCACAGGATTCCACCTGGAGTACAAAG
Seq C2 exon
CAAAGCTACGTGAATCTTGCTTTGATCCTGGAAATATAATGAATGGAACAAGACTTGGAATGGACTATAAACTAGGATCAACTGTAACATATTACTGTGATGCTGGTTATGTTTTGCAAGGATATTTTACACTAACTTGCATCATGGGAGATGATGGAAGACCTGGGTGGAACAGGGCTCTACCCAGTTGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(41.5=93.6)
A:
PF0043115=CUB=PD(57.5=95.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCCCACAGCCGAGATTGT
R:
TGTTCCACCCAGGTCTTCCAT
Band lengths:
248-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]