HsaEX6081990 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112492489-112506829:-
Coord C1 exon
chr8:112506691-112506829
Coord A exon
chr8:112503790-112503977
Coord C2 exon
chr8:112492489-112492683
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTTTTTTTTTTCAGTTT
3' ss Score
11.41
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CACCCTGTGGAGGCAATTTAACAGGATCTTCAGGCTTTATTCTTTCACCAAACTTCCCTCATCCATATCCGCATAGCAGAGACTGTGACTGGACTATCACCGTCAATGCAGACTATGTTATCTCCTTGGCGTTCATCAG
Seq A exon
TTTTAGCATAGAACCAAACTATGACTTCCTCTATATCTATGATGGACCAGACAGTAATAGCCCACTGATTGGAAGTTTTCAAGACAGCAAGTTACCAGAGAGAATAGAAAGCAGCTCAAATACAATGCATTTGGCTTTTCGGAGTGATGGATCTGTTAGTTACACTGGATTTCATCTAGAATACAAAG
Seq C2 exon
CAAAACTGCGAGAGTCCTGCTTTGATCCAGGCAATATAATGAATGGCACCAGACTTGGAATGGATTATAAATTAGGGTCAACAGTCACCTATTACTGTGATGCTGGTTATGTTCTTCAAGGTTATTCAACACTCACCTGTATCATGGGAGATGATGGAAGACCTGGATGGAATAGAGCCTTGCCAAGTTGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'56-59,'56-58,57-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(41.5=93.6)
A:
PF0043115=CUB=PD(57.5=95.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCATAGCAGAGACTGTGA
R:
GGCAAGGCTCTATTCCATCCA
Band lengths:
256-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains