BtaEX6063485 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013369 | COL14A1
Description
collagen, type XIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2191]
Coordinates
chr14:83954862-83966492:+
Coord C1 exon
chr14:83954862-83954991
Coord A exon
chr14:83959190-83959329
Coord C2 exon
chr14:83966366-83966492
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTATTCCATTTACTGCAAAGTAC
3' ss Score
1.88
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTGAAAATTGGAGAGACCCACACAGATATTGAGCTGAGCGGGTTGTTGCCCAATACGGAATACACAGTCACGGTGTACGCTATGTTTGGAGAAGAAGCCAGTGACCCCGTTACGGGCCAGGAATCGACAC
Seq A exon
TACCCTTAAGCCCACCCAGAAACCTGAGAATCTCCAATATTGGCTCTAACAGTGCTCGGTTAGCCTGGGATGCCACTTCAACAAAGATCAATGGTTATCGAATTATATATAACAACGCTGATGGGACTGAAATCAATGAG
Seq C2 exon
GTTGAAGTCGACCCTGTTACTACGTTCCCTCTGAAGGGCTTGACGCCCCTCACCGAATACACTGTTACCATTCTCTCCATCTATGACGAGGGCCAGTCCGAACCTCTGACTGGAGTTTTTACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013369-'14-22,'14-21,15-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.170 C2=0.233
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(42.7=79.5)
A:
PF0004116=fn3=PU(54.4=91.5)
C2:
PF0004116=fn3=PD(43.0=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGAGAGACCCACACAGA
R:
AACTCCAGTCAGAGGTTCGGA
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]