RnoEX6032274 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95137134-95150098:+
Coord C1 exon
chr7:95137134-95137263
Coord A exon
chr7:95139617-95139756
Coord C2 exon
chr7:95149972-95150098
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACTGTGCTCCATTCCCTTAGTAC
3' ss Score
7.21
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGAAAATCGGTGAGACACACACAGACATTGAACTGAGTGGGCTATTCCCCAATACAGAATATACAGTCACTGTGTATGCCATGTTTGGAGAAGAGGCCAGTGACCCTGCTACAGGACAAGAGACAACCC
Seq A exon
TACCCTTAACCCCACCAAGAAATTTGAGGATCTCCAATGTCGGCTCTAACAGCGCTCGGTTAACCTGGGATCCCACATCGGGAAAGATCACTGGTTACAGAATTGTGTACACCAGTGCCGACGGGACAGAAATCAATGAG
Seq C2 exon
GTCGAAGTCGATCCCATCACTACATTCCCTCTGAAAGGCTTGACCCCCCTCACAGACTACTCCATTGCCATTTTCTCCATCTATGAGGAGGGGCAGTCCTTGCCTCTGGTTGGAGAGTTTACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.277 C2=0.093
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(42.7=79.5)
A:
PF0004116=fn3=PU(54.4=91.5)
C2:
PF0004116=fn3=PD(43.0=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACACACACAGACATTGAACT
R:
GGTAAACTCTCCAACCAGAGGC
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]