GgaEX6022198 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136412904-136417827:+
Coord C1 exon
chr2:136412904-136413033
Coord A exon
chr2:136416248-136416387
Coord C2 exon
chr2:136417701-136417827
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTCCTTTTCAAGTAC
3' ss Score
8.86
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATAAAAATTGGTGAGGCCTCAACTGAACTTGAACTGGATGGACTATTGCCGAATACAGAATATACAGTCACAGTTTATGCCATGTTTGGAGAAGAAGCTAGTGATCCCCTTACTGGACAAGAAACAACAT
Seq A exon
TACCTCTAAGTCCCCCATCAAACTTGAAGTTTTCTGATGTTGGACACAATCGTGCTAAGCTAACATGGGATCCTGCTTCCAAAAATGTGAAGGGCTATCGCATCATGTACGTTAAAACAGATGGAACAGAAACCAATGAG
Seq C2 exon
GTGGAAGTTGGTCCTGTTTCAACACATACTTTAAAAAGTCTGACAGCCCTTACAGAATATACTGTTGCTATTTTCTCCCTGTATGATGAAGGACAATCTGAACCACTTACTGGCAGCTTTACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'19-28,'19-27,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.277 C2=0.326
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(42.7=79.5)
A:
PF0004116=fn3=PU(54.4=91.5)
C2:
PF0004116=fn3=PD(43.0=79.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAGGCCTCAACTGAACT
R:
TGTGGTAAAGCTGCCAGTAAGTG
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]