DreEX0022932 @ danRer10
Exon Skipping
Gene
ENSDARG00000005762 | col14a1a
Description
collagen, type XIV, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9889]
Coordinates
chr16:14926931-14931781:+
Coord C1 exon
chr16:14926931-14927060
Coord A exon
chr16:14928929-14929068
Coord C2 exon
chr16:14931655-14931781
Length
140 bp
Sequences
Splice sites
3' ss Seq
TAGTCCAATTGTTCCTGCAGTGT
3' ss Score
4.88
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
CTGAAGGTGGATGAGACGGTGACTGATGTGGAGCTGACAGGGTTGATTCCTGACACAGAGTACACCGTTACGGTCTATGCCACTTTCGGAGAGGAGGCCAGTGACCCCGCCACTGTTCAGGAGACCACCA
Seq A exon
TGTCTCTGAAACCTCCACGTAACTTGCGGGTCACTGAGGTTGACCACAGCTCTGTCCGGCTCAACTGGGATTCAGCATCCAGTAAGGTGAAAGGATATCAGGTTATCTATGTCAAAACAGATGGTGTCCAGACCAATCAG
Seq C2 exon
GTGGAATTAGGTCCAGTCACTAACGTGTATCTGAAGAACCTGTCCCCATTAACGGAGTACACCGTGGCAGTGTTTGCTGTCTATGATGGCGGCCAATCAGAAGCTCTCAGTGGCGGATTCTCCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005762-'19-27,'19-26,20-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.223 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.2=79.5)
A:
PF0004116=fn3=PU(54.4=91.5)
C2:
PF0004116=fn3=PD(43.0=79.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGATGAGACGGTGACT
R:
GAATCCGCCACTGAGAGCTTC
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]