GgaEX6022198 @ galGal3
Exon Skipping
Gene
ENSGALG00000016411 | COL14A1
Description
NA
Coordinates
chr2:142421967-142427367:+
Coord C1 exon
chr2:142421967-142422096
Coord A exon
chr2:142425199-142425338
Coord C2 exon
chr2:142427241-142427367
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTCCTTTTCAAGTAC
3' ss Score
8.86
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATAAAAATTGGTGAGGCCTCAACTGAACTTGAACTGGATGGACTATTGCCGAATACAGAATATACAGTCACAGTTTATGCCATGTTTGGAGAAGAAGCTAGTGATCCCCTTACTGGACAAGAAACAACAT
Seq A exon
TACCTCTAAGTCCCCCATCAAACTTGAAGTTTTCTGATGTTGGACACAATAGTGCTAAGCTAACATGGGATCCTGCTTCCAAAAATGTGAAGGGCTATCGCATCATGTACGTTAAAACAGATGGAACAGAAACCAATGAG
Seq C2 exon
GTGGAAGTTGGTCCTGTTTCAACACATACTTTAAAAAGTCTGACAGCCCTTACAGAATATACTGTTGCTATTTTCTCCCTGTATGATGAAGGACAATCTGAACCACTTACTGGCAGCTTTACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.255 C2=0.326
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(42.7=79.5)
A:
PF0004116=fn3=PU(54.4=91.5)
C2:
PF0004116=fn3=PD(43.0=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAGGCCTCAACTGAACT
R:
TGTGGTAAAGCTGCCAGTAAGTG
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]