BtaEX6063652 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020120 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr13:7607723-7608435:-
Coord C1 exon
chr13:7608382-7608435
Coord A exon
chr13:7607894-7607953
Coord C2 exon
chr13:7607723-7607804
Length
60 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTTTTTAACTTTAGGCA
3' ss Score
8.45
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
GCCTTAGGATTTTTGTCTTCTTATGGAATAGGAATGGAATACAATCAAGCTAAG
Seq A exon
GCACTGATATATTATACCTTTGGAAGTGCTGGAGGAAGCATGATGTCGCAGATGATTTTG
Seq C2 exon
GGGTACAGATATTTGTCAGGAATCAATGTTCTACAGAATTGTGAAGTTGCCCTAAGTCATTACAAGAAAGTGGCAGATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020120-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTAGGATTTTTGTCTTCTTATGG
R:
ATCTGCCACTTTCTTGTAATGACT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]