HsaEX6077245 @ hg19
Exon Skipping
Gene
ENSG00000101251 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:15897]
Coordinates
chr20:13868415-13869158:-
Coord C1 exon
chr20:13869105-13869158
Coord A exon
chr20:13868588-13868647
Coord C2 exon
chr20:13868415-13868496
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTTACTTTAGGCA
3' ss Score
9.02
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
GCATTAGGATTTTTGTCTTCTTATGGAATAGGAATGGAATATGATCAAGCTAAG
Seq A exon
GCACTGATATATTACACCTTTGGAAGTGCTGGAGGAAACATGATGTCCCAGATGATTTTG
Seq C2 exon
GGGTACAGATATTTGTCGGGAATCAATGTTCTACAGAATTGTGAAGTTGCCCTAAGTTATTACAAGAAAGTGGCAGATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101251-'12-15,'12-14,13-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=PU(15.2=25.0)
C2:
PF082387=Sel1=PD(78.8=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTAGGATTTTTGTCTTCTTATGG
R:
AATCTGCCACTTTCTTGTAATAACTT
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)