MmuEX6105524 @ mm9
Exon Skipping
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140091434-140092149:-
Coord C1 exon
chr2:140092096-140092149
Coord A exon
chr2:140091602-140091661
Coord C2 exon
chr2:140091434-140091515
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTCTTGTACCTTAGGCA
3' ss Score
7.97
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
GCATTAGGATTTTTATCTTCATATGGAATAGGAATGGAATATGACCAAGCCAAG
Seq A exon
GCACTGATATATTATACCTTTGGAAGTGCTGGAGGAAGCATGATGTCCCAGATGATTCTG
Seq C2 exon
GGGTACAGATACTTGTCAGGAATTAACGTTCTGCAAAATTGTGAAGTTGCCCTAAATCATTACAAGAAAGTGGCAGATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATAGGAATGGAATATGACCAAGCC
R:
AATCTGCCACTTTCTTGTAATGATT
Band lengths:
108-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: