MmuEX6105524 @ mm10
Exon Skipping
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140265698-140266413:-
Coord C1 exon
chr2:140266360-140266413
Coord A exon
chr2:140265866-140265925
Coord C2 exon
chr2:140265698-140265779
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTCTTGTACCTTAGGCA
3' ss Score
7.97
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
GCATTAGGATTTTTATCTTCATATGGAATAGGAATGGAATATGACCAAGCCAAG
Seq A exon
GCACTGATATATTATACCTTTGGAAGTGCTGGAGGAAGCATGATGTCCCAGATGATTCTG
Seq C2 exon
GGGTACAGATACTTGTCAGGAATTAACGTTCTGCAAAATTGTGAAGTTGCCCTAAATCATTACAAGAAAGTGGCAGATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATAGGAATGGAATATGACCAAGCC
R:
AATCTGCCACTTTCTTGTAATGATT
Band lengths:
108-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types