HsaEX6077245 @ hg38
Exon Skipping
Gene
ENSG00000101251 | SEL1L2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr20:13887769-13888512:-
Coord C1 exon
chr20:13888459-13888512
Coord A exon
chr20:13887942-13888001
Coord C2 exon
chr20:13887769-13887850
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTTACTTTAGGCA
3' ss Score
9.02
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
GCATTAGGATTTTTGTCTTCTTATGGAATAGGAATGGAATATGATCAAGCTAAG
Seq A exon
GCACTGATATATTACACCTTTGGAAGTGCTGGAGGAAACATGATGTCCCAGATGATTTTG
Seq C2 exon
GGGTACAGATATTTGTCGGGAATCAATGTTCTACAGAATTGTGAAGTTGCCCTAAGTTATTACAAGAAAGTGGCAGATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101251-'16-19,'16-18,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTAGGATTTTTGTCTTCTTATGG
R:
AATCTGCCACTTTCTTGTAATAACTT
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains