BtaEX6063660 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020120 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr13:7570689-7585794:-
Coord C1 exon
chr13:7585720-7585794
Coord A exon
chr13:7581703-7581875
Coord C2 exon
chr13:7570689-7570817
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGATATTTCTATCAGGCA
3' ss Score
7.75
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAAAAGCTAAAATTCTCGAAAAAGAGAAGATGTATCCAATGGCACTTCTCCTGTGGAATCGAGCTGCCATTCAAG
Seq A exon
GCAATGCATTTGCTAGAGTGAAAATTGGAGATTACCATTACTATGGCTACGGGACCAAGAAAGACTATCAAACAGCAGCCACACATTATAGCATCGCGGCCGACAAGTATCACAGCGCTCAAGCCATGTTCAACCTGGGCTATATGTACGAACATGGTTTAGGTATCACAAAG
Seq C2 exon
GACATTCACTTGGCCAGGAGATTATACGACATGGCTGCTCAAACAAGTCCGGATGCTCACATACCAGTGTTCTTGGCCCTCATGAAATTGGAAACTGTGCATTTGCTCCAAGATATCCTGTTGTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020120-'19-21,'19-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(52.9=31.0)
C2:
PF082387=Sel1=PD(41.2=32.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGAAAAAGAGAAGATGTATCCA
R:
ACAACAGGATATCTTGGAGCAA
Band lengths:
186-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]