RnoEX6019455 @ rn6
Exon Skipping
Gene
ENSRNOG00000004852 | Sel1l2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:1311278]
Coordinates
chr3:134282719-134292064:-
Coord C1 exon
chr3:134291990-134292064
Coord A exon
chr3:134289021-134289193
Coord C2 exon
chr3:134282719-134282847
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGCTATTTTTCTCAGGGA
3' ss Score
8.94
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AAAAAGCTAAAATTCTGGGGAAAGAGAAGATGTATCCAATGGCACTTCTGCTATGGAACCGAGCTGCCATTCAAG
Seq A exon
GGAATGCTTTTGCTAGAGTGAAAATTGGAGATTACCATTACTATGGCTACGGGACTAAGAAGGACTATGAAACAGCAGCCACACACTACAGCATCGCAGCAGACAAGCATCACAGTGCGCAAGCCATGTTCAACCTGGCATATATGTATGAGCACGGCTTGGGGATTGCACAG
Seq C2 exon
GACATTCACTTGGCCAGAAGATTATACGACATGGCCGCTCAGACAAGCCCAGATGCTCACATACCCGTGTTCTTTGCCCTTATGAAACTGGAAACTATGCATTTTCTCCAAGATATCCTGTTTTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004852-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(52.9=31.0)
C2:
PF082387=Sel1=PD(41.2=32.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTAAAATTCTGGGGAAAGAGA
R:
ACAGGATATCTTGGAGAAAATGCA
Band lengths:
194-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]