MmuEX6105535 @ mm9
Exon Skipping
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140056503-140069724:-
Coord C1 exon
chr2:140069650-140069724
Coord A exon
chr2:140066635-140066807
Coord C2 exon
chr2:140056503-140056631
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCTATTTCTCTCAGGGA
3' ss Score
9.7
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAAAAGCTAAAATTCTGGGGAAAGAGAAGTTGTATCCAATGGCACTTCTGCTATGGAACCGAGCCGCCATTCAAG
Seq A exon
GGAACGCTTTTGCTAGAGTAAAAATTGGAGATTACCATTACTATGGCTACGGGACTAAGAAGGACTACGAAACAGCAGCCACACACTACAGCATCGCAGCAGACAAGCATCACAGTGCACAAGCAATGTTCAACCTGGCATATATGTATGAACATGGCTTGGGTATTGCAAAG
Seq C2 exon
GACATTCACTTGGCCAGAAGATTGTACGACATGGCTGCTCAGACAAGCCCAGATGCTCACATACCTGTGTTCTTTGCCCTTATGAAACTGGAAACCATGCATCTGCTCCATGATATCCTGTTTTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(52.9=31.0)
C2:
PF082387=Sel1=PD(41.2=32.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTAAAATTCTGGGGAAAGAGA
R:
ACAGGATATCATGGAGCAGATGC
Band lengths:
194-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: