BtaEX6063751 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019488 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:HGNC:16858]
Coordinates
chr13:12822962-12825836:+
Coord C1 exon
chr13:12822962-12823027
Coord A exon
chr13:12823121-12823220
Coord C2 exon
chr13:12825684-12825836
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTTAATTATAGACG
3' ss Score
7.38
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GATTCTCAAGAAGTCTACACAAGTTTTTACACAATGAAATGGTTTTTTCAATGTTTCCTTGATCGG
Seq A exon
ACGCCCTTTACACTAAACCTCAGAATATGGGACATCTATATCTTCGAAGGAGAGCGAGTTCTTACTGCTATGTCTTACACAATCTTAAAATTACACAGAA
Seq C2 exon
AACATCTTATGAGATTGTCCATGGAAGAACTTGTAGAATTTCTTCAGGAGACCTTGGCAAAGGATTTTTTCTTCGAAGATGACTTTGTAATAGAGCAGCTCCAGATTTCTATGGCAGAACTGAAGCGGGCAAAGCTCGACCTTCCAGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019488-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
PF0056613=RabGAP-TBC=FE(15.7=100)
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTCAAGAAGTCTACACAAGTT
R:
AGGCTCTGGAAGGTCGAGC
Band lengths:
218-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]