GgaEX1062732 @ galGal3
Exon Skipping
Gene
ENSGALG00000006706 | LOC419104
Description
NA
Coordinates
chr1:6161673-6163682:-
Coord C1 exon
chr1:6163617-6163682
Coord A exon
chr1:6163434-6163533
Coord C2 exon
chr1:6161673-6161825
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCTTGATTCTTTCATTGCAGACT
3' ss Score
8.68
5' ss Seq
GAAGTGAGA
5' ss Score
3.22
Exon sequences
Seq C1 exon
GACTCTCAAGAGATGTCCACTAGCTTTTACACCACAAAATGGTTTTTCCAGTGTTTCCTTGATCGC
Seq A exon
ACTCCCTTTATGTTAAGCCTCAGGATATGGGATATCTACATACTTGAAGGAGAGCGGGTTCTCACTGCTATGTCGTACACAATTCTGAAGATACACAGAA
Seq C2 exon
AACATCTGATGAAATTACAAATGGAAGAGCTTGTAGAATTTCTTCAGGAGACTCTAGCTAAGGATTTCTTCTATGAAGATGACTATGTAATAGAACAGCTCCAAAATTCTATATCAGAATTGAAACGAGCAAAGTTGGATTTACCAGTAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006706-'24-21,'24-19,25-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
PF0056613=RabGAP-TBC=FE(15.7=100)
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCAAGAGATGTCCACTAGCT
R:
CAGCTACTGGTAAATCCAACTTTGC
Band lengths:
218-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]