HsaEX0070012 @ hg19
Exon Skipping
Gene
ENSG00000148429 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:16858]
Coordinates
chr10:11523769-11527233:-
Coord C1 exon
chr10:11527168-11527233
Coord A exon
chr10:11526970-11527069
Coord C2 exon
chr10:11523769-11523921
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGCTTTTAATTGTAGACT
3' ss Score
8.36
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GATTCTCAAGAAATCTACACAAGTTTTTACACAATGAAATGGTTTTTTCAGTGTTTCCTTGATCGT
Seq A exon
ACTCCCTTTACACTAAACCTCAGAATATGGGATATCTACATCTTTGAAGGAGAACGAGTTCTTACTGCTATGTCTTACACCATCTTAAAATTACACAAAA
Seq C2 exon
AACATCTAATGAAATTGTCCATGGAAGAACTTGTAGAATTTTTTCAGGAGACCCTGGCAAAGGATTTTTTCTTTGAAGATGATTTTGTGATAGAGCAACTTCAGATTTCTATGACAGAACTAAAGCGGGCAAAGTTAGACCTTCCAGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148429-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
PF0056613=RabGAP-TBC=FE(15.7=100)
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAGTTTTTACACAATGAAATGG
R:
AGGTTCTGGAAGGTCTAACTTTGC
Band lengths:
202-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)