DreEX0083958 @ danRer10
Exon Skipping
Gene
ENSDARG00000022187 | usp6nl
Description
USP6 N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041210-192]
Coordinates
chr4:24058805-24060326:-
Coord C1 exon
chr4:24060261-24060326
Coord A exon
chr4:24060010-24060109
Coord C2 exon
chr4:24058805-24058957
Length
100 bp
Sequences
Splice sites
3' ss Seq
TATGTGCGTGTTTTGAATAGACT
3' ss Score
6.69
5' ss Seq
AAAGTAATG
5' ss Score
1.16
Exon sequences
Seq C1 exon
GATAACCAGGAGGTCTACACCAGCTTATACACTATGAAGTGGTTCTTTCAGTGTTTCTTGGACCGG
Seq A exon
ACTCCATTCACGCTGACACTGAGAATATGGGACATTTATATTCTGGAAGGAGAGCGAGTCCTGACTGCAATGTCTTACACCATCCTGAAACTTCACAAAA
Seq C2 exon
AAACACTTTTGAAGCTGTCTATGGAGGAGCTGGTGAAGTTTCTACAGGTGACTCTGTCAAACGATTTCTTTTTTGAGGACGACTTTGTTATAGAGCAGCTTCAAAACTCCATGTCTGAGCTCAGACGGTCTAAACTGGAGCTGCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022187-'21-17,'21-16,22-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.168
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
PF0056613=RabGAP-TBC=FE(15.7=100)
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGGTCTACACCAGCTT
R:
GCAGCTCCAGTTTAGACCGTC
Band lengths:
205-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]