RnoEX6054073 @ rn6
Exon Skipping
Gene
ENSRNOG00000017644 | Usp6nl
Description
USP6 N-terminal like [Source:RGD Symbol;Acc:1311786]
Coordinates
chr17:75775333-75778097:-
Coord C1 exon
chr17:75778032-75778097
Coord A exon
chr17:75777841-75777940
Coord C2 exon
chr17:75775333-75775485
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTGTCTGTCCTGCAGACT
3' ss Score
10.41
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GATTCTCAAGAAATCTATACAAGTTTTTACACAATGAAGTGGTTTTTTCAGTGTTTCCTTGACCGA
Seq A exon
ACTCCCTTCAGGCTGAACCTCCGGATCTGGGACATCTACATCTTTGAGGGAGAGCGAATTCTCACTGCTATGTCTTATACAATCTTGAAGCTACACAGAA
Seq C2 exon
AGCATCTAATGAAGTTGTCTATGGAAGAACTTGTAGAATTTCTTCAGGAGACTCTCGCCAAGGACTTTTTCTTCGAGGATGATTTCGTAATAGAGCAACTGCAGGTCTCTATGACAGAGTTAAAGCGGGCCAAGTTAGATCTCCCAGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017644-'29-23,'29-22,30-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.173
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
PF0056613=RabGAP-TBC=FE(15.7=100)
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGTTTTTACACAATGAAGTGGT
R:
CAGGTTCTGGGAGATCTAACTTGG
Band lengths:
202-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]