BtaEX6064039 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23181417-23221162:+
Coord C1 exon
chr13:23181417-23181456
Coord A exon
chr13:23207009-23207187
Coord C2 exon
chr13:23221045-23221162
Length
179 bp
Sequences
Splice sites
3' ss Seq
GACCTTTTTTTCCCTTATAGGTA
3' ss Score
12.52
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TTAAAAGCTTTCTCAGAGTTGCTGAATGCAATACACAATG
Seq A exon
GTATTTATAACAGCAATGATGTAGCAGTATCATTTCCAAATGTAGTATCTGGCTCAGGATCGAGTACTCCTGTCTCCAGTTCTCATTTACCTCAGCAACCTTCTGGGCATTTACAGCAAGTGGGCGCTCTCTCCCCGTCAGCTGGGTCATCTGCACCCTCTGCTGTTGCTGCAACTCAG
Seq C2 exon
GCAAATACCCTATCTGGATCGTCTCTTAATCAGGCATCATCTCATATGTATGGCAATAGATTAAATTCAACTTCATCAATGGCAGCTCTTATAGCTCAGTCTGAAAACAATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074-'51-47,'51-46,54-47=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.683 C2=0.850
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCTTTCTCAGAGTTGCTG
R:
TGTTTGATTGTTTTCAGACTGAGCT
Band lengths:
155-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]