RnoEX0054834 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84944667-84966172:+
Coord C1 exon
chr17:84944667-84944711
Coord A exon
chr17:84956892-84957070
Coord C2 exon
chr17:84966055-84966172
Length
179 bp
Sequences
Splice sites
3' ss Seq
TAAAATTTCTTTGGTTGCAGGTA
3' ss Score
8.54
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAATTTCCATGCAGTATCGACATGATGGAGCTTGTCCAACAACTA
Seq A exon
GTATTTATAACAGCAATGATGTAGCCGTTTCCTTCCCAAACGTGGTGTCTGGCTCAGGATCGAGCACTCCCGTCTCCAGCTCTCATATACCTCAGCAGTCGTCTGGGCATTTGCAACAGGTGGGAGCTCTCTCCCCCTCGGCTGCGTCATCTGTAACCCCCGCTGCTGCTACAACTCAG
Seq C2 exon
GCAAACACCGCTCCTGGATCTTCTCTGAGTCAGGCACCGGCCCATGTGTATGGCAGTAGATTAAATCAGAATCCATCCATGGCCGTTCTTATAGCTCAGTCTGAGAGCAGCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249-'32-37,'32-35,35-37
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.790 C2=0.844
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCATGCAGTATCGACATGA
R:
CTGTTTGGCTGCTCTCAGA
Band lengths:
162-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]