Special

GgaEX0011300 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr2:17851932-17889708:-
Coord C1 exon
chr2:17889142-17889708
Coord A exon
chr2:17867900-17868078
Coord C2 exon
chr2:17851932-17852049
Length
179 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTAATTTTTTTCAGGTA
3' ss Score
10.92
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TTTTTTGAGTTTTACAGAAACAGATCTGAGAAGTGACAGTTTCACTCATTCTCAACAGGCTTCGTCAACCAAAGATGTACATAAAGGAGAGACTGGGAGTCAAGAGGGAGGTGTCAACTGTTTCACTTCCTTAATTGGTCTCCCTTCATCATCAGCTGTTTCCCAATCTAAAAACTTTGACAGCTCACCTGGAGACATAAGTAATTCAAGCCTTACTTCTACAGCATACAAAAGAGCTCAAACTTCTGGAATAGAAGAGGAAACTGTAACAGAGAAGAAACGGAAAGGAAATAAGCAAAGTAAACATGGGCCTGGTAGACCCAAAGGAAATAAAAGTCAAGAAAATATTTCCCATCTTTCAGTTTCTTCCGCTTCCCCAACTTCATCTGTGGCATCTGCTGCAGGAAGTGTGACAAGCTCTGGTCTTCAAAAATCTCCAACTTTGCTCAGGAATGGAAGTTTACAAAGTCTTAGTGTTGGCTCATCTCCAGTGGGTTCAG
Seq A exon
GTATTTTTAGCAGCAATGATGTAGCAGTATCATTTCCAAATGCAGTATCTGGCTCAGGATCTAGCACTCCCGTTTCCAGTTCTCATTTACCTCAGCAGGCTTCAGGCCACTTGCAGCAAGTGGGAGCTCTATCACCTTCAACTGCGCCTTCTATAACTACTGTTGTTGCTGCAACTCAG
Seq C2 exon
GCAAACACCCTACCTGGATCATCTCTCAGTCTGCCTCCATCCCATATGTATGGCAATAGGCTGAATCCAAATTCAGCAATGGCAGCACTTATAGCTCAGTCTGACAACAGCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX1-13/21=9-14
Average complexity
S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.889 A=0.650 C2=0.850
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGTAAACATGGGCCTGG
R:
GGATGGAGGCAGACTGAGAGA
Band lengths:
248-427
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]