Special

GgaEX0011300 @ galGal4

Exon Skipping

Gene
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17821311-17858040:-
Coord C1 exon
chr2:17857474-17858040
Coord A exon
chr2:17836698-17836876
Coord C2 exon
chr2:17821311-17821428
Length
179 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTAATTTTTTTCAGGTA
3' ss Score
10.92
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TTTTTTGAGTTTTACAGAAACAGATCTGAGAAGTGACAGTTTCACTCATTCTCAACAGGCTTCGTCAACCAAAGATGTACATAAAGGAGAGACTGGGAGTCAAGAGGGAGGTGTCAACTGTTTCACTTCCTTAATTGGTCTCCCTTCATCATCAGCTGTTTCCCAATCTAAAAACTTTGACAGCTCACCTGGAGACATAAGTAATTCAAGCCTTACTTCTACAGCATACAAAAGAGCTCAAACTTCTGGAATAGAAGAGGAAACTGTAACAGAGAAGAAACGGAAAGGAAATAAGCAAAGTAAACATGGGCCTGGTAGACCCAAAGGAAATAAAAGTCAAGAAAATATTTCCCATCTTTCAGTTTCTTCCGCTTCCCCAACTTCATCTGTGGCATCTGCTGCAGGAAGTGTGACAAGCTCTGGTCTTCAAAAATCTCCAACTTTGCTCAGGAATGGAAGTTTACAAAGTCTTAGTGTTGGCTCATCTCCAGTGGGTTCAG
Seq A exon
GTATTTTTAGCAGCAATGATGTAGCAGTATCATTTCCAAATGCAGTATCTGGCTCAGGATCTAGCACTCCCGTTTCCAGTTCTCATTTACCTCAGCAGGCTTCAGGCCACTTGCAGCAAGTGGGAGCTCTATCACCTTCAACTGCGCCTTCTATAACTACTGTTGTTGCTGCAACTCAG
Seq C2 exon
GCAAACACCCTACCTGGATCATCTCTCAGTCTGCCTCCATCCCATATGTATGGCAATAGGCTGAATCCAAATTCAGCAATGGCAGCACTTATAGCTCAGTCTGACAACAGCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX2-12/14=10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.925 A=0.783 C2=0.925
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
ENSGALT00000012873fB1252


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGTAAACATGGGCCTGG
R:
GGATGGAGGCAGACTGAGAGA
Band lengths:
248-427
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]