BtaEX6064161 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008056 | GAD2
Description
Bos taurus glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) (GAD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205723]
Coordinates
chr13:26995259-26999001:+
Coord C1 exon
chr13:26995259-26995366
Coord A exon
chr13:26995899-26995988
Coord C2 exon
chr13:26998719-26999001
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTTACTCTCCACTTCATAGCCT
3' ss Score
7.17
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGGACCATCGGGTTTGAAGCACATATTGATAAGTGTTTGGAGCTGGCGGAGTATTTATACAATATCATCAAAAACCGAGAAGGTTATGAAATGGTGTTTGATGGAAAG
Seq A exon
CCTCAGCACACCAATGTCTGCTTCTGGTACGTACCTCCGAGCTTGCGTGTCCTGGACAACAATGAAGAGAGACTGAGCCGCCTCTCCAAG
Seq C2 exon
GTGGCTCCCATGATTAAAGCCAGGATGATGGAGTCTGGGACCACAATGGTGAGCTACCAGCCCTTGGGTGACAAGGTCAACTTCTTCCGCATGGTCATCTCAAACCCCGCAGCAACTCACCAAGACATTGACTTCCTGATTGAAGAAATAGAACGCCTGGGACAGGATTTATAATAACCTAGCTCACTAAGCTGTTTCAATTCTCTAGGTAGACAATTAAGTTGTCACAAACCGTGTAAATGTATTTGTAGTTTGTTCCAAAGTAAATCTATTTCTATATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008056-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(9.4=100)
A:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGTGTTTGGAGCTGGCGG
R:
ACCATGCGGAAGAAGTTGACC
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]