MmuEX6099232 @ mm9
Exon Skipping
Gene
ENSMUSG00000026787 | Gad2
Description
glutamic acid decarboxylase 2 [Source:MGI Symbol;Acc:MGI:95634]
Coordinates
chr2:22540479-22549394:+
Coord C1 exon
chr2:22540479-22540586
Coord A exon
chr2:22540900-22540989
Coord C2 exon
chr2:22545693-22549394
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCTATTTTCTTCCTTTTAGCCT
3' ss Score
9.91
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGGACTACTGGGTTTGAGGCACACATTGATAAGTGTTTGGAGCTAGCAGAGTATTTATACACTATCATAAAAAACCGAGAAGGCTATGAAATGGTGTTTGATGGGAAG
Seq A exon
CCTCAACACACAAATGTCTGCTTCTGGTTTGTACCTCCTAGTTTGCGCACTCTGGAAGACAATGAAGAGAGAATGAGCCGCCTCTCAAAG
Seq C2 exon
GTGGCGCCAGTGATTAAAGCCAGAATGATGGAGTATGGGACCACAATGGTCAGCTACCAACCCTTAGGGGACAAGGTCAACTTCTTCCGCATGGTCATCTCAAACCCTGCAGCAACTCACCAAGACATTGACTTCCTTATTGAAGAAATCGAACGCCTCGGACAAGATTTGTAATCACCTCACTCATCAAACTGTTTCAGTTCTCTAGGTAGACAGCTAAGTTGTCACAAACTGTGTAAATGTATTTGTAGTTTGTTCCAGAATAATTCTATTTCTATATCGTGGTGTCACAGTAGAGTACAGTTTAAAAAAATCAAAACCAGTGGGGTGGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTAAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAACCAAAAAACAAAGAAATCAAAACCAACAGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026787-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(9.4=100)
A:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTACTGGGTTTGAGGCAC
R:
CCCTAAGGGTTGGTAGCTGAC
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: