GgaEX1025892 @ galGal3
Exon Skipping
Gene
ENSGALG00000007588 | F1N890_CHICK
Description
NA
Coordinates
chr2:16179053-16181230:-
Coord C1 exon
chr2:16181123-16181230
Coord A exon
chr2:16179907-16179996
Coord C2 exon
chr2:16179053-16179226
Length
90 bp
Sequences
Splice sites
3' ss Seq
CACTGTTATTCTGTGCTTAGCCT
3' ss Score
5.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGAACCACGGGATTTGAAGCACAAATTGATAAGTGCTTGGAACTTGCAGAATACCTGTACAACAAAATAAAGAACAGAGAAGGGTATGAAATGGTGTTTGATGGAAAG
Seq A exon
CCTCAGCACACAAACGTCTGCTTCTGGTATATACCTCCCAGCTTGCGCGGCATGGAAGACAATGAAGAAAGGATGAGCCGCCTCATGAAG
Seq C2 exon
GTGGCACCAGTGATAAAAGCCAGGATGATGGAATATGGGACGACCATGGTGAGCTATCAGCCTCTGGGAGACAAAGTGAACTTCTTCCGGATGGTCATCTCAAACCCAGCAGCAACTCATCAGGACATTGATTTCCTGATTGATGAAATAGAGCGCCTGGGACAAGATTTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007588-'10-13,'10-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(12.4=100)
A:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCACGGGATTTGAAGCA
R:
AGGCTGATAGCTCACCATGGT
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]