RnoEX0037486 @ rn6
Exon Skipping
Gene
ENSRNOG00000018200 | Gad2
Description
glutamate decarboxylase 2 [Source:RGD Symbol;Acc:2653]
Coordinates
chr17:89229299-89238040:+
Coord C1 exon
chr17:89229299-89229406
Coord A exon
chr17:89229718-89229807
Coord C2 exon
chr17:89234463-89238040
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCTATTTTCTTCTTTTTTAGCCT
3' ss Score
9.34
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
GGGACTACTGGATTTGAAGCTCACATTGATAAGTGTTTGGAGCTGGCAGAGTATTTATACAATATCATTAAAAACCGAGAAGGATATGAAATGGTGTTCGATGGGAAG
Seq A exon
CCTCAGCACACAAATGTCTGCTTCTGGTTTGTACCTCCTAGTTTGCGAGTTCTGGAAGACAATGAAGAGAGAATGAGCCGCCTCTCAAAG
Seq C2 exon
GTGGCGCCAGTGATTAAAGCCAGAATGATGGAGTATGGGACCACAATGGTCAGCTACCAACCCTTAGGAGATAAGGTCAACTTCTTCCGCATGGTCATCTCAAACCCTGCAGCAACTCACCAAGACATTGACTTCCTCATTGAAGAAATCGAACGCCTGGGACAAGATTTGTAATCACTTTGCTCACCAAACTTTCAGTTCTCTAGGTAGACAGCTAAGTTGTCACAAACTGTGTAAATGTATTTGTAGTTTGTTCCAGAGTAATTCTATTTCTATATCGTGGTGTCACAGTAGAGTCCAGTTTAAAAATATCAAAACCAACAGGAAACATCGCTCCTTTTAAAAAATCCTTTCTTAAGTTTAGAAAACCTCTCTAATAATTAGTGACAAAAGGCTAAGTTCTAATCAGTAAGAGAAAGTATAAAGTTGTTATAAATACTTCCCTTTTAATATTTATGCTAATCCAACCTTACTTTCACTTCAGAGCAGTAGTGCTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018200-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(9.4=100)
A:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTTTGGAGCTGGCAGAG
R:
ACCATGCGGAAGAAGTTGACC
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]