DreEX0034083 @ danRer10
Exon Skipping
Gene
ENSDARG00000015537 | gad2
Description
glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
Coordinates
chr24:6103818-6116085:-
Coord C1 exon
chr24:6115978-6116085
Coord A exon
chr24:6113347-6113436
Coord C2 exon
chr24:6103818-6108334
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATGGTCTCGTGTCCTTGCAGCCG
3' ss Score
9.95
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCACGATTGGTTTTGAGGCTCAGATCGACAAATGCCTGGAGCTTTCCGAATATCTCTACAACAAGATTAAGGACAGGGAAGGATATCAGATGGTGTTTGATGGAAAG
Seq A exon
CCGCAGCATACCAATGTGTGTTTCTGGTACCTTCCACCGGGCGTGCGCTACCTGGAGGACAAAGTGGAGAGGATGAAGCGTCTGCACAAG
Seq C2 exon
GTTGCCCCTGTAATCAAAGCCAGAATGATGGAGTACGGCACGACCATGGTGAGCTACCAGCCACAGGGAGACAAGGTCAACTTCTTCCGCATGGTCATCTCCAATCCAGCCGCTACCTTTGAAGACATTGACTTCCTCATTGAAGAGATCGAGCGACTGGGGCAGGATCTTTAAAACTTACCGCACCAAAACCTGTTACTCCCGTGTCCCTGGATGGATTGCATATTTGTTGTGAATGTAACGGTAAATCTCTGATTCCTCTTCTCCAAAGTCACATTTAAACAAAAAAAGGATAATATGAAAATATCTAGAGTATAGTATTGTAGCGTCGTTGTGGGCTTCATGGTCCAGAGCCCTGTAAAAGTGTTACCGTCTGCTTTTACTGTCTATCTTAATGTCTTTGACATGACTTTGTTTGTTTACATGTTTATTGAGAATATGAAGAGTTGTTTGCTTCTATTCGGTGCAGATCATATGTTTCCATTTGAACAGTTATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015537_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(9.4=100)
A:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
C2:
NO
Main Skipping Isoform:
ENSDART00000021609fB2871
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCCTGGAGCTTTCCGA
R:
ACCATGCGGAAGAAGTTGACC
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]