BtaEX6064415 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022000 | CACNB2
Description
Bos taurus calcium channel, voltage-dependent, beta 2 subunit (CACNB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175789]
Coordinates
chr13:33258226-33280666:+
Coord C1 exon
chr13:33258226-33258284
Coord A exon
chr13:33267148-33267257
Coord C2 exon
chr13:33280515-33280666
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTTTTTCGCCAACAGGAT
3' ss Score
10.66
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTCACAGATATGATGCAAAAAGCACTGTTCGATTTTTTAAAACACAGATTCGAAGGGCG
Seq A exon
GATTTCCATCACAAGGGTCACCGCCGACATCTCACTGGCCAAACGCTCTGTCTTAAACAATCCCAGTAAGCATGCAATAATAGAAAGATCCAACACGAGGTCAAGCTTAG
Seq C2 exon
CGGAAGTTCAGAGTGAAATCGAAAGGATTTTTGAACTTGCAAGAACACTGCAACTGGTGGTCCTTGACGCGGACACTATCAATCACCCAGCCCAGCTCAGTAAAACCTCTCTGGCCCCTATTATAGTGTATGTCAAGATTTCTTCTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022000-'16-14,'16-12,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=FE(20.4=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAAGCACTGTTCGATTTT
R:
AGGAGAAGAAATCTTGACATACACT
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]